Preheat oven to 375°F. Line a 12-cup muffin pan with liners.
Melt the butter and let it cool until warm but not hot.
Mill soft white wheat berries in an electric mill.
If using a scale, weigh out the sugar, vanilla, water, and pumpkin puree required for this recipe. Simply use measuring cups if not using a kitchen scale. Put melted butter and sugar in a mixing bowl and cream.
Add vanilla, water, and pumpkin puree and mix.
If using a scale, weigh out the flour, baking soda, baking powder, salt, and pumpkin pie spice required in the recipe. Simply use measuring cups if not using a kitchen scale. Add all ingredients to a stainless steel mixing bowl and stir to combine.
Add dry ingredients to the wet ingredients. Mix well.
Gently fold in 1 cup of chocolate chips. Let batter rest for ten minutes.
Line a muffin pan with cupcake liners. Fill each liner with 3 tablespoons of muffin batter.
Bake at 375°F for 5 minutes. Reduce the oven temperature to 350°F and bake for an additional 20 minutes or until done.
Cool in the muffin pan for 5 minutes, then transfer muffins to a baking rack to finish cooling.
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