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One dozen pumpkin chocolate chip muffins on top of a fall-themed kitchen towel with pumpkins on it.

Pumpkin Chocolate Chip Muffins with Fresh Milled Flour

These pumpkin chocolate chip muffins are everything you want in a fall bake — warm spices, rich pumpkin flavor, and pockets of melty chocolate in every bite. Made with fresh milled flour, they're softer and more nutrient-dense than the store-bought flour version, without sacrificing that bakery-style texture. Perfect for busy mornings, lunchbox treats, or an afternoon snack with coffee.
Prep Time 30 minutes
Cook Time 25 minutes
Course Breakfast, Dessert, Snack
Cuisine American
Servings 12 muffins

Ingredients
  

  • 1/2 cup butter, melted
  • 1 cup granulated sugar 227g
  • 2 eggs, room temperature
  • 1 tsp vanilla
  • 3/4 cup plus 1 tbsp pumpkin puree 222.4g
  • 1/3 cup water 67.5g
  • 2 cups plus 8 tbsp fresh milled soft white wheat flour 264.2g Can substitute all-purpose flour. Use 1 2/3 cups of flour for this option.
  • 1 tsp baking soda 3.4g
  • 1/2 tsp baking powder 0.9g
  • 1 tsp sea salt 5g
  • 1 tsp pumpkin pie spice 2.5g
  • 1 cup chocolate chips 161.1g

Instructions
 

  • Preheat oven to 375°F. Line a 12-cup muffin pan with liners.
  • Melt the butter and let it cool until warm but not hot.
  • Mill soft white wheat berries in an electric mill.
  • If using a scale, weigh out the sugar, vanilla, water, and pumpkin puree required for this recipe. Simply use measuring cups if not using a kitchen scale. Put melted butter and sugar in a mixing bowl and cream.
  • Add vanilla, water, and pumpkin puree and mix.
  • If using a scale, weigh out the flour, baking soda, baking powder, salt, and pumpkin pie spice required in the recipe. Simply use measuring cups if not using a kitchen scale. Add all ingredients to a stainless steel mixing bowl and stir to combine.
  • Add dry ingredients to the wet ingredients. Mix well.
  • Gently fold in 1 cup of chocolate chips. Let batter rest for ten minutes.
  • Line a muffin pan with cupcake liners. Fill each liner with 3 tablespoons of muffin batter.
  • Bake at 375°F for 5 minutes. Reduce the oven temperature to 350°F and bake for an additional 20 minutes or until done.
  • Cool in the muffin pan for 5 minutes, then transfer muffins to a baking rack to finish cooling.
Keyword fresh milled flour muffins, fresh milled flour recipes