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Banana Bread Muffins with Chocolate Chips (Fresh Milled Flour Recipe)

Fresh Milled Flour Recipes · June 11, 2025

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Last Updated on May 30, 2026 by Kimberly

Growing up, my mom made banana bread on a regular basis. I loved the way the house smelled when banana bread was in the oven! I have modified the recipe to make banana bread muffins with chocolate chips and fresh milled flour.

Why You’ll Love These Banana Bread Muffins with Chocolate Chips

Making banana bread or muffins is a great way to use up leftover bananas that have gotten too ripe for eating. I keep a stash in my freezer when I’m ready to whip up banana bread or muffins. The flavor ripe bananas give to banana bread or muffins is delicious! Pro tip: Never substitute firm, barely ripe bananas. The flavor just won’t be the same.

Use Fresh Milled Flour for Maximum Nutrition

To start, you are going to need to mill some soft white wheat berries. Soft white wheat berries are better for muffins, quick bread, and cookies because they have less protein than hard white wheat berries. This means your final product won’t have as much gluten and will be softer in texture.

Ingredients for Banana Bread Muffins with Chocolate Chips

  • Fresh Milled Flour (can substitute organic all-purpose flour)
  • Baking Soda
  • Salt
  • Butter
  • Organic Sugar
  • Egg
  • Bananas
  • Unflavored Protein Powder (optional)
  • Chocolate Chips

How to Make Banana Bread Muffins with Chocolate Chips



Put 1 ½ cup of freshly milled flour in a bowl along with 1 teaspoon of baking soda and 1 teaspoon of salt.

Melt ¼ cup of butter on the stove. Put this in your mixing bowl. Add 1 cup of organic sugar and cream together. Next, add 1 egg and 3-4 ripe bananas and mix in.

Add the flour, salt, and baking soda to the wet ingredients and mix until combined.

Add 1 scoop unflavored protein powder ( I like Paleo Valley 100% Grass Fed Bone Broth Protein) and ¾ cup chocolate chips to the batter and mix in.

Line your muffin tins with unbleached muffin liners. Spoon the batter in until the muffin cups are 2/3 of the way full.

Bake at 350°F for 20-25 minutes.

Fresh milled flour banana bread muffins cooling on a baking rack with a blue kitchen towel underneath, golden brown with domed tops and a soft, tender crumb, made with ripe bananas for a wholesome homemade look.

Banana Bread Muffins with Chocolate Chips (Fresh Milled Flour Recipe)

These banana muffins are inspired by a recipe from my mother-in-law! Muffins are a great place to start when beginning to use freshly milled flour.
Print Recipe Pin Recipe
Prep Time 20 minutes mins
Cook Time 20 minutes mins
Total Time 40 minutes mins
Course Breakfast, Snack
Servings 12 servings

Ingredients
  

  • 1/4 cup melted butter
  • 1 cup organic sugar
  • 1 egg
  • 3-4 ripe bananas
  • 1 1/2 cup freshly milled flour
  • 1 tsp. baking soda
  • 1 tsp. salt
  • Optional: 1 scoop unflavored protein powder, 3/4 cup chocolate chips

Instructions
 

  • Mill soft white wheat berries in an electric mill.
  • Add 1 1/2 cup freshly milled flour, 1 tsp. baking soda, and 1 tsp. salt to a mixing bowl. Set aside
  • Melt 1/4 cup butter on the stove. Add to a mixing bowl along with 1 cup of organic sugar. Cream together, then add 1 egg. Mix in 3-4 ripe bananas.
  • Add the flour, baking soda, and salt to the wet ingredients and mix until combined. Fold in unflavored protein powder and 3/4 cup of chocolate chips if desired.
  • Line a muffin tin with unbleached muffin liners. Spoon the batter in until until the muffin cups are 2/3 of the way full.
  • Bake at 350°F for 20-25 minutes or until lightly browned.
  • If you make this recipe, please scroll to the comments and give it a rating. This helps my website so much!

Notes

  • Organic all-purpose flour can be substituted evenly for the freshly milled flour.
  • How to Store and Reheat Banana Bread Muffins with Chocolate Chips

    When done, let cool on a wire baking rack. I like to serve these muffins along with scrambled eggs, bacon, or sausage.

    These muffins will keep in an airtight container on the counter for a few days.

    Also, you can put these muffins in a freezer bag and store them in the freezer for a long time.

    FAQs

    • Bananas are a great source of Vitamin B6, Vitamin C, Vitamin A, fiber, magnesium, and potassium.
    • Fresh milled flour contains the following vitamins: thiamin (B1),riboflavin, niacin, pantothenic acid, biotin, folate, and vitamin E.
    • Fresh milled flour contains the following minerals: copper, magnesium, zinc, phosphorus, and iron.

    More Easy & Healthy Breakfast Ideas

    • Baking Sheet Pancakes with Freshly Milled Flour
    • Healthy Zucchini Muffins
    • Homemade Granola with Organic Oats

    Did you make these banana muffins?
    I’d love to hear what you thought — leave a comment below and share your favorite add-ins or tweaks!

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    « Homemade Granola with Organic Oats
    Blueberry Muffins with Lemon Glaze | Healthier Homemade Breakfast Recipe »

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    Hello there! I'm Kimberly. I'm on a mission to help families build a healthy lifestyle, one simple habit at a time.

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